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Title: | Packaging research artefacts with RO-Crate | Authors: | Stian Soiland-Reyes Peter Sefton Mercè Crosas Leyla Jael Castro Frederik Coppens José Maria Fernández Daniel Garijo Björn Grüning Marco La Rosa Simone Leo Eoghan Ó Carragáin Marc Portier Ana Trisovic RO-Crate Community Paul Groth Carole Goble |
Affiliations: | Department of Computer Science, The University of Manchester, UK; Informatics Institute, University of Amsterdam, The Netherlands Faculty of Science, University Technology Sydney, Australia Institute for Quantitative Social Science, Harvard University, Cambridge, MA, USA ZB MED Information Centre for Life Sciences, Cologne, Germany VIB-UGent Center for Plant Systems Biology, Gent, Belgium Barcelona Supercomputing Center, Barcelona, Spain Ontology Engineering Group, Universidad Politécnica de Madrid, Madrid, Spain Bioinformatics Group, Department of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany PARADISEC, Melbourne, Australia Center for Advanced Studies, Research, and Development in Sardinia (CRS4), Pula (CA), Italy University College Cork, Ireland Vlaams Instituut voor de Zee, Oostende, Belgium Institute for Quantitative Social Science, Harvard University, Cambridge, MA, USA (see Appendix B) Informatics Institute, University of Amsterdam, The Netherlands Department of Computer Science, The University of Manchester, UK |
Editors: | Silvio Peroni | Keywords: | Data publishing, data packaging, FAIR, Linked Data, metadata, reproducibility, research object | Issue Date: | 20-Jul-2022 | Publisher: | IOS Press | Project: | Providing an open collaborative space for digital biology in Europe | Journal: | Data Science | Volume: | 5 | Issue: | 2 | Start page: | 97 | End page: | 138 | Abstract: | An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema.org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying “just enough” Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also enhancing research reproducibility. An RO-Crate for this article is archived at https://doi.org/10.5281/zenodo.5146227. |
URI: | https://dspace.crs4.it/jspui/handle/1138/47 | DOI: | 10.3233/DS-210053 |
Appears in Collections: | CRS4 publications |
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soiland-reyes_2022_rocrate.pdf | Published version | 772,56 kB | Adobe PDF | View/Open |
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